Measuring telomere length and telomere dynamics in evolutionary biology and ecology
Identifieur interne : 003735 ( Main/Exploration ); précédent : 003734; suivant : 003736Measuring telomere length and telomere dynamics in evolutionary biology and ecology
Auteurs : Daniel H. Nussey [Royaume-Uni] ; Duncan Baird [Royaume-Uni] ; Emma Barrett [Royaume-Uni] ; Winnie Boner [Royaume-Uni] ; Jennifer Fairlie [Royaume-Uni] ; Neil Gemmell [Nouvelle-Zélande] ; Nils Hartmann [Allemagne] ; Thorsten Horn [Allemagne] ; Mark Haussmann [États-Unis] ; Mats Olsson [Australie] ; Chris Turbill [Australie] ; Simon Verhulst ; Sandrine Zahn [France] ; Pat Monaghan [Royaume-Uni]Source :
- Methods in Ecology and Evolution [ 2041-210X ] ; 2014.
Abstract
Telomeres play a fundamental role in the protection of chromosomal DNA and in the regulation of cellular senescence. Recent work in human epidemiology and evolutionary ecology suggests adult telomere length (TL) may reflect past physiological stress and predict subsequent morbidity and mortality, independent of chronological age. Several different methods have been developed to measure TL, each offering its own technical challenges. The aim of this review is to provide an overview of the advantages and drawbacks of each method for researchers, with a particular focus on issues that are likely to face ecologists and evolutionary biologists collecting samples in the field or in organisms that may never have been studied in this context before. We discuss the key issues to consider and wherever possible try to provide current consensus view regarding best practice with regard to sample collection and storage, DNA extraction and storage, and the five main methods currently available to measure TL. Decisions regarding which tissues to sample, how to store them, how to extract DNA, and which TL measurement method to use cannot be prescribed, and are dependent on the biological question addressed and the constraints imposed by the study system. What is essential for future studies of telomere dynamics in evolution and ecology is that researchers publish full details of their methods and the quality control thresholds they employ.
Url:
DOI: 10.1111/2041-210X.12161
PubMed: 25834722
PubMed Central: 4375921
Affiliations:
- Allemagne, Australie, France, Nouvelle-Zélande, Royaume-Uni, États-Unis
- District de Cologne, Rhénanie-du-Nord-Westphalie
- Cologne
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Nussey</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Institute of Evolutionary Biology and Centre for Immunity, Infection & Evolution, University of Edinburgh</institution><addr-line>Edinburgh, EH9 3JT, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Edinburgh, EH9 3JT</wicri:regionArea><wicri:noRegion>EH9 3JT</wicri:noRegion></affiliation></author><author><name sortKey="Baird, Duncan" sort="Baird, Duncan" uniqKey="Baird D" first="Duncan" last="Baird">Duncan Baird</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>Institute of Cancer and Genetics, School of Medicine, Cardiff University</institution><addr-line>Cardiff, CF14 4XN, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Cardiff, CF14 4XN</wicri:regionArea><wicri:noRegion>CF14 4XN</wicri:noRegion></affiliation></author><author><name sortKey="Barrett, Emma" sort="Barrett, Emma" uniqKey="Barrett E" first="Emma" 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Nussey</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Institute of Evolutionary Biology and Centre for Immunity, Infection & Evolution, University of Edinburgh</institution><addr-line>Edinburgh, EH9 3JT, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Edinburgh, EH9 3JT</wicri:regionArea><wicri:noRegion>EH9 3JT</wicri:noRegion></affiliation></author><author><name sortKey="Baird, Duncan" sort="Baird, Duncan" uniqKey="Baird D" first="Duncan" last="Baird">Duncan Baird</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>Institute of Cancer and Genetics, School of Medicine, Cardiff University</institution><addr-line>Cardiff, CF14 4XN, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Cardiff, CF14 4XN</wicri:regionArea><wicri:noRegion>CF14 4XN</wicri:noRegion></affiliation></author><author><name sortKey="Barrett, Emma" sort="Barrett, Emma" uniqKey="Barrett E" first="Emma" last="Barrett">Emma Barrett</name><affiliation wicri:level="1"><nlm:aff id="au3"><institution>School of Biological Sciences, University of East Anglia</institution><addr-line>Norwich, NR4 7TJ, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Norwich, NR4 7TJ</wicri:regionArea><wicri:noRegion>NR4 7TJ</wicri:noRegion></affiliation></author><author><name sortKey="Boner, Winnie" sort="Boner, Winnie" uniqKey="Boner W" first="Winnie" last="Boner">Winnie Boner</name><affiliation wicri:level="1"><nlm:aff id="au4"><institution>Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow</institution><addr-line>Glasgow, G12 8QQ, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Glasgow, G12 8QQ</wicri:regionArea><wicri:noRegion>G12 8QQ</wicri:noRegion></affiliation></author><author><name sortKey="Fairlie, Jennifer" sort="Fairlie, Jennifer" uniqKey="Fairlie J" first="Jennifer" last="Fairlie">Jennifer Fairlie</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Institute of Evolutionary Biology and Centre for Immunity, Infection & Evolution, University of Edinburgh</institution><addr-line>Edinburgh, EH9 3JT, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Edinburgh, EH9 3JT</wicri:regionArea><wicri:noRegion>EH9 3JT</wicri:noRegion></affiliation></author><author><name sortKey="Gemmell, Neil" sort="Gemmell, Neil" uniqKey="Gemmell N" first="Neil" last="Gemmell">Neil Gemmell</name><affiliation wicri:level="1"><nlm:aff id="au5"><institution>Department of Anatomy, Allan Wilson Centre for Molecular Ecology and Evolution, University of Otago</institution><addr-line>Dunedin, 9054, New Zealand</addr-line></nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Dunedin, 9054</wicri:regionArea><wicri:noRegion>9054</wicri:noRegion></affiliation></author><author><name sortKey="Hartmann, Nils" sort="Hartmann, Nils" uniqKey="Hartmann N" first="Nils" last="Hartmann">Nils Hartmann</name><affiliation wicri:level="1"><nlm:aff id="au6"><institution>Leibniz Institute for Age Research – Fritz Lipmann Institute (FLI), Molecular Genetics Group</institution><addr-line>Jena, 07745, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Jena, 07745</wicri:regionArea><wicri:noRegion>07745</wicri:noRegion><wicri:noRegion>07745</wicri:noRegion><wicri:noRegion>07745</wicri:noRegion></affiliation></author><author><name sortKey="Horn, Thorsten" sort="Horn, Thorsten" uniqKey="Horn T" first="Thorsten" last="Horn">Thorsten Horn</name><affiliation wicri:level="3"><nlm:aff id="au7"><institution>Institute for Developmental Biology, Cologne Biocenter, University of Cologne</institution><addr-line>Cologne, 50674, Germany</addr-line></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Cologne, 50674</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Haussmann, Mark" sort="Haussmann, Mark" uniqKey="Haussmann M" first="Mark" last="Haussmann">Mark Haussmann</name><affiliation wicri:level="1"><nlm:aff id="au8"><institution>Department of Biology, Bucknell University</institution><addr-line>Lewisburg, PA, 17837, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Lewisburg, PA, 17837</wicri:regionArea><wicri:noRegion>17837</wicri:noRegion></affiliation></author><author><name sortKey="Olsson, Mats" sort="Olsson, Mats" uniqKey="Olsson M" first="Mats" last="Olsson">Mats Olsson</name><affiliation wicri:level="1"><nlm:aff id="au9"><institution>School of Biological Sciences, University of Sydney</institution><addr-line>Sydney, NSW, 2006, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Sydney, NSW, 2006</wicri:regionArea><wicri:noRegion>2006</wicri:noRegion></affiliation></author><author><name sortKey="Turbill, Chris" sort="Turbill, Chris" uniqKey="Turbill C" first="Chris" last="Turbill">Chris Turbill</name><affiliation wicri:level="1"><nlm:aff id="au10"><institution>Hawkesbury Institute for the Environment, University of Western Sydney</institution><addr-line>Richmond, NSW, 2753, Australia</addr-line></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Richmond, NSW, 2753</wicri:regionArea><wicri:noRegion>2753</wicri:noRegion></affiliation></author><author><name sortKey="Verhulst, Simon" sort="Verhulst, Simon" uniqKey="Verhulst S" first="Simon" last="Verhulst">Simon Verhulst</name><affiliation><nlm:aff id="au11"><institution>University of Groningen</institution><addr-line>Groningen, 9747 AG, Holland</addr-line></nlm:aff><wicri:noCountry code="subfield">Holland</wicri:noCountry></affiliation></author><author><name sortKey="Zahn, Sandrine" sort="Zahn, Sandrine" uniqKey="Zahn S" first="Sandrine" last="Zahn">Sandrine Zahn</name><affiliation wicri:level="1"><nlm:aff id="au12"><institution>Département d'Ecologie, Physiologie et Ethologie (DEPE), Institut Pluridisciplinaire Huber Curien, CNRS UMR7178</institution><addr-line>Strasbourg Cedex 2, 67087, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Strasbourg Cedex 2, 67087</wicri:regionArea><wicri:noRegion>67087</wicri:noRegion><wicri:noRegion>67087</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="au13"><institution>University of Strasbourg</institution><addr-line>Strasbourg Cedex, F-67081, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Strasbourg Cedex, F-67081</wicri:regionArea><wicri:noRegion>67081</wicri:noRegion><wicri:noRegion>67081</wicri:noRegion></affiliation></author><author><name sortKey="Monaghan, Pat" sort="Monaghan, Pat" uniqKey="Monaghan P" first="Pat" last="Monaghan">Pat Monaghan</name><affiliation wicri:level="1"><nlm:aff id="au4"><institution>Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow</institution><addr-line>Glasgow, G12 8QQ, UK</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Glasgow, G12 8QQ</wicri:regionArea><wicri:noRegion>G12 8QQ</wicri:noRegion></affiliation></author></analytic><series><title level="j">Methods in Ecology and Evolution</title><idno type="ISSN">2041-210X</idno><idno type="eISSN">2041-210X</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><list list-type="order"><list-item><p>Telomeres play a fundamental role in the protection of chromosomal DNA and in the regulation of cellular senescence. Recent work in human epidemiology and evolutionary ecology suggests adult telomere length (TL) may reflect past physiological stress and predict subsequent morbidity and mortality, independent of chronological age.</p></list-item><list-item><p>Several different methods have been developed to measure TL, each offering its own technical challenges. The aim of this review is to provide an overview of the advantages and drawbacks of each method for researchers, with a particular focus on issues that are likely to face ecologists and evolutionary biologists collecting samples in the field or in organisms that may never have been studied in this context before.</p></list-item><list-item><p>We discuss the key issues to consider and wherever possible try to provide current consensus view regarding best practice with regard to sample collection and storage, DNA extraction and storage, and the five main methods currently available to measure TL.</p></list-item><list-item><p>Decisions regarding which tissues to sample, how to store them, how to extract DNA, and which TL measurement method to use cannot be prescribed, and are dependent on the biological question addressed and the constraints imposed by the study system. What is essential for future studies of telomere dynamics in evolution and ecology is that researchers publish full details of their methods and the quality control thresholds they employ.</p></list-item></list></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Angelier, F" uniqKey="Angelier F">F Angelier</name></author><author><name sortKey="Vleck, Cm" uniqKey="Vleck C">CM Vleck</name></author><author><name sortKey="Holberton, Rl" uniqKey="Holberton R">RL Holberton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Armanios, M" uniqKey="Armanios M">M Armanios</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aubert, G" uniqKey="Aubert G">G Aubert</name></author><author><name sortKey="Hills, M" uniqKey="Hills M">M Hills</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aubert, G" uniqKey="Aubert G">G 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Salomons</name></author><author><name sortKey="Mulder, Ga" uniqKey="Mulder G">GA Mulder</name></author><author><name sortKey="Van De Zande, L" uniqKey="Van De Zande L">L van de Zande</name></author><author><name sortKey="Haussmann, Mf" uniqKey="Haussmann M">MF Haussmann</name></author><author><name sortKey="Linskens, Mhk" uniqKey="Linskens M">MHK Linskens</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schroeder, T" uniqKey="Schroeder T">T Schroeder</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shiels, Pg" uniqKey="Shiels P">PG Shiels</name></author><author><name sortKey="Kind, Aj" uniqKey="Kind A">AJ Kind</name></author><author><name sortKey="Campbell, Kh" uniqKey="Campbell K">KH Campbell</name></author><author><name sortKey="Waddington, D" uniqKey="Waddington D">D Waddington</name></author><author><name sortKey="Wilmut, I" uniqKey="Wilmut I">I Wilmut</name></author><author><name sortKey="Colman, A" uniqKey="Colman A">A Colman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Simons, Mjp" uniqKey="Simons M">MJP Simons</name></author><author><name sortKey="Stulp, G" uniqKey="Stulp G">G Stulp</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smith, S" uniqKey="Smith S">S Smith</name></author><author><name sortKey="Turbill, C" uniqKey="Turbill C">C Turbill</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Steenstrup, T" uniqKey="Steenstrup T">T Steenstrup</name></author><author><name sortKey="Hjelmborg, Jv" uniqKey="Hjelmborg J">JV Hjelmborg</name></author><author><name sortKey="Kark, Jd" uniqKey="Kark J">JD Kark</name></author><author><name sortKey="Christensen, K" uniqKey="Christensen K">K Christensen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Svensson, U" uniqKey="Svensson U">U Svensson</name></author><author><name sortKey="Nordfjall, K" uniqKey="Nordfjall K">K Nordfjall</name></author><author><name sortKey="Baird, Dm" uniqKey="Baird D">DM Baird</name></author><author><name sortKey="Roger, L" uniqKey="Roger L">L Roger</name></author><author><name sortKey="Osterman, P" uniqKey="Osterman P">P Osterman</name></author><author><name sortKey="Hellenius, M L" uniqKey="Hellenius M">M-L Hellenius</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Turbill, C" uniqKey="Turbill C">C Turbill</name></author><author><name sortKey="Smith, S" uniqKey="Smith S">S Smith</name></author><author><name sortKey="Deimel, C" uniqKey="Deimel C">C Deimel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vera, E" uniqKey="Vera E">E Vera</name></author><author><name sortKey="Bernardes De Jesus, B" uniqKey="Bernardes De Jesus B">B Bernardes de Jesus</name></author><author><name sortKey="Foronda, M" uniqKey="Foronda M">M Foronda</name></author><author><name sortKey="Flores, Jm" uniqKey="Flores J">JM Flores</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Verhulst, S" uniqKey="Verhulst S">S Verhulst</name></author><author><name sortKey="Aviv, A" uniqKey="Aviv A">A Aviv</name></author><author><name sortKey="Benetos, A" uniqKey="Benetos A">A Benetos</name></author><author><name sortKey="Berenson, Gs" uniqKey="Berenson G">GS Berenson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Z" uniqKey="Wang Z">Z Wang</name></author><author><name sortKey="Rhee, Db" uniqKey="Rhee D">DB Rhee</name></author><author><name sortKey="Lu, J" uniqKey="Lu J">J Lu</name></author><author><name sortKey="Bohr, Ct" uniqKey="Bohr C">CT Bohr</name></author><author><name sortKey="Zhou, F" uniqKey="Zhou F">F Zhou</name></author><author><name sortKey="Vallabhaneni, H" uniqKey="Vallabhaneni H">H Vallabhaneni</name></author><author><name sortKey="De Souza Pinto, Nc" uniqKey="De Souza Pinto N">NC de Souza-Pinto</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Weng, N P" uniqKey="Weng N">N-P Weng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Young, Rc" uniqKey="Young R">RC Young</name></author><author><name sortKey="Kitaysky, As" uniqKey="Kitaysky A">AS Kitaysky</name></author><author><name sortKey="Haussmann, Mf" uniqKey="Haussmann M">MF Haussmann</name></author><author><name sortKey="Descamps, S" uniqKey="Descamps S">S Descamps</name></author><author><name sortKey="Orben, Ra" uniqKey="Orben R">RA Orben</name></author><author><name sortKey="Elliott, Kh" uniqKey="Elliott K">KH Elliott</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Von Zglinicki, T" uniqKey="Von Zglinicki T">T von Zglinicki</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>France</li><li>Nouvelle-Zélande</li><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>District de Cologne</li><li>Rhénanie-du-Nord-Westphalie</li></region><settlement><li>Cologne</li></settlement></list><tree><noCountry><name sortKey="Verhulst, Simon" sort="Verhulst, Simon" uniqKey="Verhulst S" first="Simon" last="Verhulst">Simon Verhulst</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Nussey, Daniel H" sort="Nussey, Daniel H" uniqKey="Nussey D" first="Daniel H" last="Nussey">Daniel H. Nussey</name></noRegion><name sortKey="Baird, Duncan" sort="Baird, Duncan" uniqKey="Baird D" first="Duncan" last="Baird">Duncan Baird</name><name sortKey="Barrett, Emma" sort="Barrett, Emma" uniqKey="Barrett E" first="Emma" last="Barrett">Emma Barrett</name><name sortKey="Boner, Winnie" sort="Boner, Winnie" uniqKey="Boner W" first="Winnie" last="Boner">Winnie Boner</name><name sortKey="Fairlie, Jennifer" sort="Fairlie, Jennifer" uniqKey="Fairlie J" first="Jennifer" last="Fairlie">Jennifer Fairlie</name><name sortKey="Monaghan, Pat" sort="Monaghan, Pat" uniqKey="Monaghan P" first="Pat" last="Monaghan">Pat Monaghan</name></country><country name="Nouvelle-Zélande"><noRegion><name sortKey="Gemmell, Neil" sort="Gemmell, Neil" uniqKey="Gemmell N" first="Neil" last="Gemmell">Neil Gemmell</name></noRegion></country><country name="Allemagne"><noRegion><name sortKey="Hartmann, Nils" sort="Hartmann, Nils" uniqKey="Hartmann N" first="Nils" last="Hartmann">Nils Hartmann</name></noRegion><name sortKey="Horn, Thorsten" sort="Horn, Thorsten" uniqKey="Horn T" first="Thorsten" last="Horn">Thorsten Horn</name></country><country name="États-Unis"><noRegion><name sortKey="Haussmann, Mark" sort="Haussmann, Mark" uniqKey="Haussmann M" first="Mark" last="Haussmann">Mark Haussmann</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Olsson, Mats" sort="Olsson, Mats" uniqKey="Olsson M" first="Mats" last="Olsson">Mats Olsson</name></noRegion><name sortKey="Turbill, Chris" sort="Turbill, Chris" uniqKey="Turbill C" first="Chris" last="Turbill">Chris Turbill</name></country><country name="France"><noRegion><name sortKey="Zahn, Sandrine" sort="Zahn, Sandrine" uniqKey="Zahn S" first="Sandrine" last="Zahn">Sandrine Zahn</name></noRegion><name sortKey="Zahn, Sandrine" sort="Zahn, Sandrine" uniqKey="Zahn S" first="Sandrine" last="Zahn">Sandrine Zahn</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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